--- title: Command Line noheader: true permalink: cli_documentation/ layout: documentation location: cli_documentation ---

wot provides a command line interface that offers fine-grained control over calculations.
Help is available for each tool using the syntax wot tool -h. For example, wot optimal_transport -h. We recommend pegasus for preprocessing, visualization, and clustering tools.


{% for tool in site.data.tools %}

{{ tool.name }}

{% for param in tool.params %} {% endfor %}
Parameter Description
{% if param.required %} {% endif %} {{param.name}} {% if param.required %} {% endif %} {{param.help}}{% if param.choices %}
Choices: {{param.choices | join: ", "}} {% endif %}{% if param.default %}
Default: {{param.default}} {% endif %}
{% if site.data.examples[tool.name] %} Example Usage:
wot {{tool.name }} {{ site.data.examples[tool.name].code }}
{{ site.data.examples[tool.name].text }} {% endif %}
{% endfor %}